Merge branch 'master' into feature/simplifiedMassMatrix

.github/workflows/benchmark.yml

@@ -11,13 +11,13 @@ jobs:
   benchmark:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
           persist-credentials: false
     - name : installPackages
       run : sudo apt-get update && sudo apt-get install --no-install-recommends --yes libgsl-dev libeigen3-dev libnlopt-dev libnlopt-cxx-dev libboost-all-dev libbenchmark-dev
     - name: Get number of CPU cores
-      uses: SimenB/github-actions-cpu-cores@v1
+      uses: SimenB/github-actions-cpu-cores@v2
       id: cpu-cores
     - name: cmake
       run: mkdir build && cd build && cmake .. -DCMAKE_BUILD_TYPE=Release

.github/workflows/benchmark_on_pr.yml

@@ -16,13 +16,13 @@ jobs:
   PRbenchmark:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
           persist-credentials: false
     - name : installPackages
       run : sudo apt-get update && sudo apt-get install --no-install-recommends --yes libgsl-dev libeigen3-dev libnlopt-dev libnlopt-cxx-dev libboost-all-dev libbenchmark-dev
     - name: Get number of CPU cores
-      uses: SimenB/github-actions-cpu-cores@v1
+      uses: SimenB/github-actions-cpu-cores@v2
       id: cpu-cores
     - name: cmake
       run: mkdir build && cd build && cmake .. -DCMAKE_BUILD_TYPE=Release

.github/workflows/build-mac.yml

@@ -14,13 +14,13 @@ jobs:
     if: "!contains(github.event.head_commit.message, 'skip-ci')"
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
           persist-credentials: false
     - name: installPackages
       run: brew install eigen && brew install gsl && brew install nlopt && brew install boost && brew install libomp && brew install nlohmann-json
     - name: Get number of CPU cores
-      uses: SimenB/github-actions-cpu-cores@v1
+      uses: SimenB/github-actions-cpu-cores@v2
       id: cpu-cores
     - name: cmake
       run: mkdir build && cd build && cmake ..

.github/workflows/build.yml

@@ -14,13 +14,13 @@ jobs:
     if: "!contains(github.event.head_commit.message, 'skip-ci')"
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
           persist-credentials: false
     - name : installPackages
       run : sudo apt-get install --no-install-recommends --yes libgsl-dev libeigen3-dev libnlopt-dev libnlopt-cxx-dev libboost-all-dev nlohmann-json3-dev
     - name: Get number of CPU cores
-      uses: SimenB/github-actions-cpu-cores@v1
+      uses: SimenB/github-actions-cpu-cores@v2
       id: cpu-cores
     - name: cmake
       run: mkdir build && cd build && cmake .. 

.github/workflows/build_on_windows.yml

@@ -14,7 +14,7 @@ jobs:
     if: "!contains(github.event.head_commit.message, 'skip-ci')"
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
           persist-credentials: false
     - uses: actions/setup-python@v4
@@ -26,7 +26,7 @@ jobs:
     - name: Refresh Shell
       run: refreshenv
     - name: Get number of CPU cores
-      uses: SimenB/github-actions-cpu-cores@v1
+      uses: SimenB/github-actions-cpu-cores@v2
       id: cpu-cores
     - name: cmake
       run: cmake -S . -B build -DUseConan=On -DCMAKE_BUILD_TYPE=Release

.github/workflows/cmake-format-linter.yml

@@ -11,11 +11,11 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v3
+      uses: actions/checkout@v4
 
     - name: Format CMake files
       id: cmake-format
-      uses: PuneetMatharu/[email protected].2
+      uses: PuneetMatharu/[email protected].4
       with:
         args: --config-files .cmake-format.py --in-place
 

.github/workflows/codecov.yml

@@ -27,13 +27,13 @@ jobs:
     if: "!contains(github.event.head_commit.message, 'skip-ci')"
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
           persist-credentials: false
     - name : installPackages
       run : sudo apt-get update && sudo apt-get install --no-install-recommends --yes libgsl-dev libeigen3-dev libnlopt-dev libnlopt-cxx-dev libboost-all-dev lcov
     - name: Get number of CPU cores
-      uses: SimenB/github-actions-cpu-cores@v1
+      uses: SimenB/github-actions-cpu-cores@v2
       id: cpu-cores
     - name: cmake
       run: mkdir build && cd build && cmake .. -DEnableCoverage=On

.github/workflows/codeql.yml

@@ -24,7 +24,7 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
           submodules: recursive
 
@@ -42,7 +42,7 @@ jobs:
         if: matrix.language == 'cpp'
 
       - name: Get number of CPU cores
-        uses: SimenB/github-actions-cpu-cores@v1
+        uses: SimenB/github-actions-cpu-cores@v2
         id: cpu-cores
         if: matrix.language == 'cpp'
       - name: cmake

.github/workflows/cpp-linter.yml

@@ -8,7 +8,7 @@ jobs:
   cpp-linter:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - uses: cpp-linter/cpp-linter-action@v2
         id: linter
         env:

.github/workflows/doc.yml

@@ -14,18 +14,18 @@ jobs:
   Deploy:
      runs-on: ubuntu-20.04
      steps:
-     - uses: actions/checkout@v3
+     - uses: actions/checkout@v4
        with:
           persist-credentials: false
      - name: installPackages
        run: sudo apt-get install --no-install-recommends --yes libgsl-dev libeigen3-dev libnlopt-cxx-dev libboost-all-dev doxygen
      - name: Get number of CPU cores
-       uses: SimenB/github-actions-cpu-cores@v1
+       uses: SimenB/github-actions-cpu-cores@v2
        id: cpu-cores
      - name: cmake
        run: mkdir build && cd build && cmake .. && cmake --build . -j${{ steps.cpu-cores.outputs.count }} -t doc
      - name: Deploy
-       uses: JamesIves/[email protected].1
+       uses: JamesIves/[email protected].3
        with:
           branch: gh-pages # The branch the action should deploy to.
           folder: build/html # The folder the action should deploy.

.github/workflows/test-mac.yml

@@ -18,13 +18,13 @@ jobs:
     if: "!contains(github.event.head_commit.message, 'skip-ci')"
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
           persist-credentials: false
     - name : installPackages
       run : brew install eigen gsl nlopt boost libomp nlohmann-json
     - name: Get number of CPU cores
-      uses: SimenB/github-actions-cpu-cores@v1
+      uses: SimenB/github-actions-cpu-cores@v2
       id: cpu-cores
     - name: cmake
       run: mkdir build && cd build && cmake .. 
@@ -38,13 +38,13 @@ jobs:
     if: "!contains(github.event.head_commit.message, 'skip-ci')"
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
           persist-credentials: false
     - name : installPackages
       run : brew install eigen gsl boost libomp nlohmann-json
     - name: Get number of CPU cores
-      uses: SimenB/github-actions-cpu-cores@v1
+      uses: SimenB/github-actions-cpu-cores@v2
       id: cpu-cores
     - name: cmake
       run: mkdir buildNoNLOPT && cd buildNoNLOPT && cmake .. 

.github/workflows/test.yml

@@ -18,13 +18,13 @@ jobs:
     if: "!contains(github.event.head_commit.message, 'skip-ci')"
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
           persist-credentials: false
     - name : installPackages
       run : sudo apt-get update && sudo apt-get install --no-install-recommends --yes libgsl-dev libeigen3-dev libnlopt-dev libnlopt-cxx-dev libboost-all-dev
     - name: Get number of CPU cores
-      uses: SimenB/github-actions-cpu-cores@v1
+      uses: SimenB/github-actions-cpu-cores@v2
       id: cpu-cores
     - name: cmake
       run: mkdir build && cd build && cmake .. 
@@ -38,13 +38,13 @@ jobs:
     if: "!contains(github.event.head_commit.message, 'skip-ci')"
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
           persist-credentials: false
     - name : installPackages
       run : sudo apt-get update && sudo apt-get install --no-install-recommends --yes libgsl-dev libeigen3-dev libboost-all-dev
     - name: Get number of CPU cores
-      uses: SimenB/github-actions-cpu-cores@v1
+      uses: SimenB/github-actions-cpu-cores@v2
       id: cpu-cores
     - name: cmake
       run: mkdir buildNoNLOPT && cd buildNoNLOPT && cmake .. 

.github/workflows/windows_unit_tests.yml

@@ -18,7 +18,7 @@ jobs:
     if: "!contains(github.event.head_commit.message, 'skip-ci')"
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
           persist-credentials: false
     - uses: actions/setup-python@v4
@@ -27,10 +27,8 @@ jobs:
         architecture: 'x64' # optional x64 or x86. Defaults to x64 if not specified
     - name: Install conan
       run: pip install conan<2.0
-    - name: Refresh Shell
-      run: refreshenv
     - name: Get number of CPU cores
-      uses: SimenB/github-actions-cpu-cores@v1
+      uses: SimenB/github-actions-cpu-cores@v2
       id: cpu-cores
     - name: cmake
       run: cmake -S . -B build -DUseConan=On -DCMAKE_BUILD_TYPE=Release