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nf-core · Nov 28, 2024 · a31e7db · a31e7db
1 parent 4980695
commit a31e7db
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Showing 2 changed files with 1 addition and 2 deletions.
diff --git a/tests/test_concat_germline_vcfs.yml b/tests/test_concat_germline_vcfs.yml
@@ -2,7 +2,7 @@
   command: nextflow run main.nf -profile test --input ./tests/csv/3.0/mapped_joint_bam.csv --concatenate_vcfs --tools deepvariant,freebayes,haplotypecaller,manta,mpileup,strelka,tiddit --step variant_calling --outdir results
   tags:
     - concatenate_vcfs
-files:
+  files:
     - path: results/variant_calling/concat/testN/testN.deepvariant.germline.vcf.gz
     - path: results/variant_calling/concat/testT/testT.deepvariant.germline.vcf.gz
     - path: results/variant_calling/concat/testN/testN.deepvariant.germline.vcf.gz.tbi

diff --git a/tests/test_normalize_vcfs.yml b/tests/test_normalize_vcfs.yml
@@ -3,7 +3,6 @@
   tags:
     - normalize_vcfs
   files:
-files:
     - path: results/variant_calling/normalized/testN/testN.deepvariant.norm.vcf.gz
     - path: results/variant_calling/normalized/testT/testT.deepvariant.norm.vcf.gz
     - path: results/variant_calling/normalized/testN/testN.deepvariant.norm.vcf.gz.tbi