try again to upload now with proper file path

nf-core · Nov 28, 2023 · 62fc529 · 62fc529
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commit 62fc529
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/.github/workflows/ncbench.yml b/.github/workflows/ncbench.yml
@@ -35,15 +35,15 @@ jobs:
         if: ${{ matrix.enabled }}
         with:
           # TODO: download all vcfs
-          source: s3://nf-core-awsmegatests/sarek/results-test-59026dc07633edb83aab3bfb2f65f79db38437a1/test_full/variant_calling/strelka
+          source: s3://nf-core-awsmegatests/sarek/results-test-59026dc07633edb83aab3bfb2f65f79db38437a1/test_full/variant_calling
           command: sync
           aws_region: eu-west-1
           destination: ./variant_calling
           flags: --no-sign-request --include ".vcf.gz" --exclude "g.vcf.gz"
 
       - name: list files
         run: |
-          ls variant_calling/
+          ls variant_calling/strelka/HCC1395N/
 
       - name: Install requests
         run: pip install requests # version pinning?

diff --git a/.github/workflows/upload.py b/.github/workflows/upload.py
@@ -9,7 +9,7 @@
 url = f"https://zenodo.org/api/deposit/depositions?access_token={access_token}"
 
 filename = "*.vcf.gz"
-path = "../../../variant_calling/%s" % filename
+path = "variant_calling/strelka/HCC1395N/%s" % filename
 
 with open(path, "rb") as fp:
     r = requests.post(