Skip to content
@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

Pinned Loading

  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 269 128

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 296 162

Repositories

Showing 10 of 94 repositories
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice’s past year of commit activity
    JavaScript 296 AGPL-3.0 162 239 (4 issues need help) 34 Updated Jan 10, 2025
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 20 11 Updated Jan 10, 2025
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 3 0 8 1 Updated Jan 10, 2025
  • yellow-fever Public
    nextstrain/yellow-fever’s past year of commit activity
    Python 0 4 0 0 Updated Jan 9, 2025
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 92 AGPL-3.0 48 69 (1 issue needs help) 12 Updated Jan 9, 2025
  • auspice.us Public
    nextstrain/auspice.us’s past year of commit activity
    JavaScript 13 8 6 2 Updated Jan 9, 2025
  • seasonal-cov Public

    Nextstrain build for seasonal coronaviruses

    nextstrain/seasonal-cov’s past year of commit activity
    Python 1 0 1 0 Updated Jan 9, 2025
  • nextclade_data Public

    Datasets for https://github.com/nextstrain/nextclade

    nextstrain/nextclade_data’s past year of commit activity
    Python 32 28 8 12 Updated Jan 9, 2025
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 269 AGPL-3.0 128 242 (1 issue needs help) 55 Updated Jan 9, 2025
  • hmpv Public

    Human metapneumovirus pathogen build

    nextstrain/hmpv’s past year of commit activity
    Python 0 0 6 0 Updated Jan 8, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…