coessentiality-browser

Gene browser using coessentiality and related data. From the paper:

A genome-wide almanac of co-essential modules assigns function to uncharacterized genes. (https://www.biorxiv.org/content/10.1101/827071v1)

Installation/dependencies

sudo apt-get install libblas-dev liblapack-dev gfortran

In a conda environment, run: pip install -r requirements.txt.

The main requirement is Dash (https://github.com/plotly/dash/), a framework for building the interactive interface.

From the conda environment, run python app.py

The default IP is 0.0.0.0:5000 .

Name		Name	Last commit message	Last commit date
Latest commit History 124 Commits
apache_confs		apache_confs
assets		assets
data		data
Dockerfile		Dockerfile
README.md		README.md
app.py		app.py
app_config.py		app_config.py
app_lib.py		app_lib.py
building_block_divs.py		building_block_divs.py
coessentiality.wsgi		coessentiality.wsgi
diffmap.py		diffmap.py
go2gene_dict.txt		go2gene_dict.txt
goterm_caller.py		goterm_caller.py
main_coess.ipynb		main_coess.ipynb
ppi_datasets.ipynb		ppi_datasets.ipynb
requirements.txt		requirements.txt