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orange v3.5.0
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@kduyvesteyn kduyvesteyn released this 07 Jun 08:52
· 1608 commits to master since this release
orange-v3.5.0
2d91b4d

Changes:

  • Add PurpleTranscriptImpact.reported and make PurpleVariant.reported a derived field. This uses the REPORTABLE_TRANSCRIPTS vcf field introduced in PURPLE 4.0.
  • Split pharmacogenetic haplotype into separate haplotype and genotype on front page and in table.
  • A new Genetic Immune Escape analysis has been added to datamodel and report. This analysis determines whether the sample uses any of the immune escape mechanisms known in cancer. See also Genetic immune landscape paper
  • Technical: Removed work-around for pre v1.6 LILAC (incorrectly populating ref fragments in case of tumor-only)
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