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@ebi-gene-expression-group

EBI Gene Expression Group

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  1. anatomogram anatomogram Public

    Anatomogram illustrating Expression Atlas experiments

    JavaScript 41 20

  2. scanpy-scripts scanpy-scripts Public

    Scripts for using scanpy

    Python 32 13

  3. atlas atlas Public archive

    Expression Atlas

    Java 26 5

  4. r-seurat-scripts r-seurat-scripts Public

    Scripts to install as a Bioconda package for making workflows

    R 18 4

  5. container-galaxy-sc-tertiary container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    Python 17 14

  6. scxa-workflows scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    Shell 14 2

Repositories

Showing 10 of 182 repositories
  • galaxy-gxa-tools-setup Public

    Standard tool installation for GXA Galaxy instances

    ebi-gene-expression-group/galaxy-gxa-tools-setup’s past year of commit activity
    Python 0 2 0 0 Updated Jan 12, 2025
  • atlas-web-bulk Public

    Bulk Expression Atlas web application

    ebi-gene-expression-group/atlas-web-bulk’s past year of commit activity
    Java 0 Apache-2.0 1 44 4 Updated Jan 10, 2025
  • atlas-web-core Public

    Business logic for single cell and bulk Expression Atlas and for the up-and-coming Expression Atlas API

    ebi-gene-expression-group/atlas-web-core’s past year of commit activity
    Java 0 1 4 0 Updated Jan 9, 2025
  • atlas-components Public

    Front end components of Expression Atlas and Single Cell Expression Atlas

    ebi-gene-expression-group/atlas-components’s past year of commit activity
    JavaScript 3 3 14 1 Updated Jan 8, 2025
  • atlas-web-single-cell Public

    Single Cell Expression Atlas web application

    ebi-gene-expression-group/atlas-web-single-cell’s past year of commit activity
    Java 5 Apache-2.0 5 79 5 Updated Jan 8, 2025
  • scxa-tertiary-workflow Public

    Tertiary component for SCXA workflows

    ebi-gene-expression-group/scxa-tertiary-workflow’s past year of commit activity
    Nextflow 0 0 0 1 Updated Jan 7, 2025
  • scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    ebi-gene-expression-group/scxa-workflows’s past year of commit activity
    Shell 14 Apache-2.0 2 5 2 Updated Jan 3, 2025
  • scxa-control-workflow Public

    Master Nextflow workflow for running each component of the SMART-seq and droplet SCXA pipelines

    ebi-gene-expression-group/scxa-control-workflow’s past year of commit activity
    R 4 2 4 1 Updated Dec 10, 2024
  • scxa-bundle-workflow Public

    Workflow for making bundles for Single-cell Expression Atlas

    ebi-gene-expression-group/scxa-bundle-workflow’s past year of commit activity
    Nextflow 0 0 1 1 Updated Dec 6, 2024
  • scanpy-scripts Public

    Scripts for using scanpy

    ebi-gene-expression-group/scanpy-scripts’s past year of commit activity
    Python 32 Apache-2.0 13 11 4 Updated Dec 3, 2024
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