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In this PR I'm proposing to add the scripts from https://github.com/nf-core/scflow/tree/dev/bin which import the scflow package.
If the scripts were part of the R package we could add it to Bioconda and have the install process put the scripts in the PATH, cutting down the code that needs to live in the workflow.
This would also facilitate a more standard approach to the nf-core modules, with Biocontainers integration etc.
See the thread on the nf-core Slack.