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unpin xarray, numpy, pandas, netcdf4#25

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mschrimpf merged 14 commits intomainbrain-score/brainio:mainfrom unpinbrain-score/brainio:unpinCopy head branch name to clipboardSep 27, 2022

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Commits on Aug 28, 2022

• unpin xarray, numpy, pandas, netcdf4

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Commits on Aug 30, 2022

• Fix deprecation "TypeError: Using a DataArray object to construct a variable is ambiguous, please extract the data using the .data property." See pydata/xarray#6508. There are other errors, however.

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Commits on Sep 7, 2022

• See Unidata/netcdf4-python#1175 "Regression in createVariable between 1.5.8 and 1.6.0".

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• Testing on Python 3.7 only covers through xarray 0.20.2. This is an experiment.

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Commits on Sep 8, 2022

• Fix get_metadata to account for the internal restructuring of indexes in xarray 2022.06. Update tests for same.

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Commits on Sep 23, 2022

• Fixed bug where we were stripping off attrs inadvertently when writing netCDF.

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• TestPlainGroupby.test_on_data_array fails with Python = 3.8.13, numpy = 1.23.2, xarray = 2022.06.0. That means it has nothing to do with BrainIO.

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Commits on Sep 26, 2022

• test_on_data_array should not involve any BrainIO classes. This is to test for bugs in xarray. With xarray==2022.06.0, this test fails.

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• xarray 2022.06.0 has a bug which breaks BrainIO: pydata/xarray#6836.

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• Adapt get_metadata to the change in the index API between 2022.03.0 and 2022.06.0. Now test_get_metadata passes under 2022.03.0 and 2022.06.0.

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• Getting an error from tests on Travis (but not locally): RuntimeError: NetCDF: Filter error: bad id or parameters or duplicate filter. This might fix it?

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• Compression test failed: assert 614732 > 615186. This might fix it.

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• Travis doesn't offer python 3.10 yet. Make sample assembly bigger so compression has an effect.

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• Bump minor version.

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