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doc add params on cluster config
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julieaorjuela committed Jul 22, 2021
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Expand Up @@ -25,8 +25,9 @@ Frequently Asked Questions
- Bind mount disks to singularity environment by using ``--singularity-args '--bind $HOME'``. This allows to detect others disks on the singularity container.


** How to include others SLURM options on ``cluster_config.yaml``
When a SLUMR profile is created, default slurm options are created in a dictionary on the profiles/CulebrONT/slurm-submit.py script. You can add other keys into this dictionary (ex. nodelist) and populate cluster_config.yaml with these options.
**How to include others SLURM options on cluster_config.yaml**

When a SLUMR profile is created, default slurm options are created in a 'RESOURCE_MAPPING' dictionary on the profiles/CulebrONT/slurm-submit.py script. You can add other keys into this dictionary (ex. nodelist) and populate ``cluster_config.yaml`` with new options.


**The conda command is not available in the shell /bin/bash that will be used by Snakemake**
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