Update constraints.txt

constraints.txt

@@ -9,38 +9,39 @@ argon2-cffi-bindings==21.2.0
 arrow==1.3.0
 asttokens==3.0.0
 async-lru==2.0.4
-attrs==24.2.0
+attrs==24.3.0
 babel==2.16.0
-babelon==0.3.1
+babelon==0.3.4
 bcp47==0.1.0
 beautifulsoup4==4.12.3
 bidict==0.23.1
 bleach==6.2.0
 bmt==1.4.4
 cachetools==5.5.0
 cattrs==24.1.2
-certifi==2024.8.30
+certifi==2024.12.14
 cffi==1.17.1
 CFGraph==0.2.1
 chardet==5.2.0
-charset-normalizer==3.4.0
+charset-normalizer==3.4.1
 class_resolver==0.5.4
-click==8.1.7
+click==8.1.8
 click-default-group==1.2.4
 colorama==0.4.6
 comm==0.2.2
 commonmark==0.9.1
 contourpy==1.3.1
 cryptography==44.0.0
-curies==0.7.10
+curies==0.10.1
 cycler==0.12.1
 dacite==1.8.1
 daff==1.3.46
 dataclasses==0.6
 dataclasses-json==0.6.7
 dataclasses-jsonschema==2.16.0
-debugpy==1.8.9
+debugpy==1.8.11
 decorator==5.1.1
+deepl==1.20.0
 defusedxml==0.7.1
 Deprecated==1.2.15
 deprecation==2.1.0
@@ -50,21 +51,21 @@ distro==1.9.0
 docker==6.1.3
 docutils==0.21.2
 dosdp==0.1.10.dev1
-EditorConfig==0.12.4
+EditorConfig==0.17.0
 et_xmlfile==2.0.0
 eutils==0.6.0
 executing==2.1.0
 fastjsonschema==2.21.1
 fastobo==0.12.3
 filelock==3.16.1
-fonttools==4.55.2
+fonttools==4.55.3
 fqdn==1.5.1
 funowl==0.2.3
 ghp-import==2.1.0
 google==3.0.0
-google-api-core==2.23.0
-google-api-python-client==2.154.0
-google-auth==2.36.0
+google-api-core==2.24.0
+google-api-python-client==2.156.0
+google-auth==2.37.0
 google-auth-httplib2==0.2.0
 google-auth-oauthlib==1.2.1
 googleapis-common-protos==1.66.0
@@ -85,7 +86,7 @@ importlib_resources==6.4.5
 inflection==0.5.1
 iniconfig==2.0.0
 ipykernel==6.29.5
-ipython==8.30.0
+ipython==8.31.0
 ipywidgets==8.1.5
 isodate==0.7.2
 isoduration==20.11.0
@@ -94,10 +95,10 @@ jaraco.context==6.0.1
 jaraco.functools==4.1.0
 jedi==0.19.2
 jeepney==0.8.0
-Jinja2==3.1.4
+Jinja2==3.1.5
 jinjanator==24.4.0
 jinjanator-plugins==24.2.0
-jiter==0.8.0
+jiter==0.8.2
 jsbeautifier==1.15.1
 jsobject==0.10.2
 json-flattener==0.1.9
@@ -108,76 +109,76 @@ jsonlines==4.0.0
 jsonpatch==1.33
 jsonpath-ng==1.7.0
 jsonpath-rw==1.4.0
-jsonpickle==4.0.0
+jsonpickle==4.0.1
 jsonpointer==3.0.0
 jsonschema==4.23.0
 jsonschema-specifications==2024.10.1
 jsonschema2md==1.3.0
 jsonstreams==0.6.0
 jupyter==1.1.1
 jupyter-console==6.6.3
-jupyter-events==0.10.0
+jupyter-events==0.11.0
 jupyter-lsp==2.2.5
 jupyter_client==8.6.3
 jupyter_core==5.7.2
-jupyter_server==2.14.2
+jupyter_server==2.15.0
 jupyter_server_terminals==0.5.3
-jupyterlab==4.3.2
+jupyterlab==4.3.4
 jupyterlab_pygments==0.3.0
 jupyterlab_server==2.27.3
 jupyterlab_widgets==3.0.13
-keyring==25.5.0
+keyring==25.6.0
 kgcl-rdflib==0.5.0
 kgcl_schema==0.6.9
 kgx==2.4.2
-kiwisolver==1.4.7
+kiwisolver==1.4.8
 lark==1.2.2
 lightrdf==0.4.0
 linkml==1.8.5
 linkml-dataops==0.1.0
 linkml-renderer==0.3.1
 linkml-runtime==1.8.3
-llm==0.13.1
+llm==0.19.1
 lxml==5.3.0
 Markdown==3.7
 markdown-it-py==3.0.0
 MarkupSafe==3.0.2
-marshmallow==3.23.1
-matplotlib==3.9.3
+marshmallow==3.23.2
+matplotlib==3.10.0
 matplotlib-inline==0.1.7
 matplotlib-venn==1.1.1
 mdurl==0.1.2
 mergedeep==1.3.4
-mistune==3.0.2
+mistune==3.1.0
 mkdocs==1.6.1
 mkdocs-get-deps==0.2.0
-mkdocs-material==9.5.48
+mkdocs-material==9.5.49
 mkdocs-material-extensions==1.3.1
 mkdocs-mermaid2-plugin==1.2.1
 mkdocs-table-reader-plugin==3.1.0
 more-click==0.1.2
 more-itertools==10.5.0
-mypy==1.13.0
+mypy==1.14.0
 mypy-extensions==1.0.0
-nbclient==0.10.1
+nbclient==0.10.2
 nbconvert==7.16.4
 nbformat==5.10.4
 ndex2==3.9.0
 neo4j==5.27.0
 nest-asyncio==1.6.0
 networkx==3.4.2
-nh3==0.2.19
-notebook==7.3.1
+nh3==0.2.20
+notebook==7.3.2
 notebook_shim==0.2.4
 numpy==1.26.4
 oaklib==0.6.18
 oauthlib==3.2.2
 ols-client==0.1.4
-ontobio==2.9.10
+ontobio==2.9.12
 ontodev-cogs==0.3.3
 ontodev-gizmos==0.3.2
 ontoportal-client==0.0.4
-openai==1.57.0
+openai==1.58.1
 openpyxl==3.1.5
 ordered-set==4.1.0
 overrides==7.7.0
@@ -203,35 +204,36 @@ prometheus_client==0.21.1
 prompt_toolkit==3.0.48
 pronto==2.5.8
 proto-plus==1.25.0
-protobuf==5.29.1
-psutil==6.1.0
+protobuf==5.29.2
+psutil==6.1.1
 ptyprocess==0.7.0
 pure_eval==0.2.3
+puremagic==1.28
 pyarrow==15.0.2
 pyasn1==0.6.1
 pyasn1_modules==0.4.1
 pycparser==2.22
-pydantic==2.10.3
-pydantic_core==2.27.1
+pydantic==2.10.4
+pydantic_core==2.27.2
 pydotplus==2.0.2
 PyGithub==2.5.0
 Pygments==2.18.0
 PyJSG==0.11.10
 PyJWT==2.10.1
-pymdown-extensions==10.12
+pymdown-extensions==10.13
 PyNaCl==1.5.0
 pyparsing==2.4.7
 pyproject-api==1.8.0
 PyShEx==0.8.1
 PyShExC==0.9.1
 pysolr==3.10.0
-pyspellchecker==0.8.1
+pyspellchecker==0.8.2
 pystow==0.6.1
 pytest==8.3.4
 pytest-logging==2015.11.4
 python-dateutil==2.9.0.post0
 python-dotenv==1.0.1
-python-json-logger==2.0.7
+python-json-logger==3.2.1
 python-ulid==3.0.0
 PyTrie==0.4.0
 pytz==2024.2
@@ -300,7 +302,7 @@ tornado==6.4.2
 tox==4.23.2
 tqdm==4.67.1
 traitlets==5.14.3
-tsvalid==0.0.4
+tsvalid==0.0.5
 twine==6.0.1
 types-python-dateutil==2.9.0.20241206
 typing-inspect==0.9.0
@@ -310,7 +312,7 @@ UpSetPlot==0.9.0
 uri-template==1.3.0
 uritemplate==4.1.1
 url-normalize==1.4.3
-urllib3==2.2.3
+urllib3==2.3.0
 validators==0.20.0
 virtualenv==20.28.0
 watchdog==6.0.0
@@ -321,6 +323,6 @@ websocket-client==1.8.0
 wheel==0.42.0
 widgetsnbextension==4.0.13
 wrapt==1.17.0
-xmltodict==0.13.0
+xmltodict==0.14.2
 yamldown==0.1.8
 zipp==3.21.0