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Fix: run workflow #55.
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arnikz committed Dec 8, 2020
1 parent f76134a commit 9548543
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions .github/workflows/CI.yml
Original file line number Diff line number Diff line change
Expand Up @@ -38,7 +38,7 @@ jobs:
run: |
cd snakemake && pytest --cov=helper_functions --cov-report=xml
- name: Run workflow
run: docker exec -u xenon -t $NAME \
bash -c "cd sv-callers && ./run.sh $ARGS"
run: |
docker exec -u xenon -t $NAME bash -c "cd sv-callers && ./run.sh $ARGS"
- name: Report coverage
run: python-codacy-coverage -r coverage.xml

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