Fix loading (#9)

.github/workflows/integration.yml

@@ -9,10 +9,10 @@ jobs:
     if: "!contains(github.event.head_commit.message, 'skip ci')"
     steps:
       - uses: actions/checkout@v2
-      - name: Use Node.js 16.x
+      - name: Use Node.js 22.x
         uses: actions/setup-node@v1
         with:
-          node-version: 16.x
+          node-version: 22.x
       - name: Install deps (with cache)
         uses: bahmutov/npm-install@v1
       - name: Get latest JBrowse

cypress/tsconfig.json

@@ -2,7 +2,7 @@
   "compilerOptions": {
     "target": "es5",
     "lib": ["es5", "dom"],
-    "types": ["cypress"],
+    "types": ["cypress"]
   },
-  "include": ["**/*.ts"],
+  "include": ["**/*.ts"]
 }

package.json

@@ -44,7 +44,6 @@
     "cypress:open": "cross-var cypress open --config baseUrl=http://localhost:$npm_package_config_browse_port",
     "lint": "eslint --ext .js,.ts,.jsx,.tsx src/",
     "prepublishOnly": "npm-run-all test",
-    "prepare": "npm-run-all build",
     "postversion": "git push --follow-tags"
   },
   "jbrowse-plugin": {
@@ -73,7 +72,6 @@
     "@babel/preset-react": "^7.10.4",
     "@emotion/react": "^11.10.4",
     "@emotion/styled": "^11.10.4",
-    "@jbrowse/cli": "^1.5.1",
     "@jbrowse/core": "^2.1.2",
     "@jbrowse/development-tools": "^2.1.1",
     "@jbrowse/plugin-linear-genome-view": "^2.1.2",

scripts/tsconfig.json

@@ -4,7 +4,7 @@
     "rootDir": ".",
     "lib": ["ES2019"],
     "module": "commonjs",
-    "target": "ES2019",
+    "target": "ES2019"
   },
-  "include": ["."],
+  "include": ["."]
 }

src/LinearGenomeMultilevelView/model.ts

@@ -35,7 +35,7 @@ export interface BpOffset {
 
 export default function stateModelFactory(pluginManager: PluginManager) {
   return (
-    pluginManager.getViewType('LinearGenomeView')
+    pluginManager.getViewType('LinearGenomeView')!
       .stateModel as LinearGenomeViewStateModel
   )
     .named('LinearGenomeMultilevelView')

src/MultilevelLinearView/components/ImportForm.tsx

@@ -16,7 +16,7 @@ import { getSession, isSessionWithAddTracks } from '@jbrowse/core/util'
 import { ErrorMessage, AssemblySelector } from '@jbrowse/core/ui'
 import BaseResult from '@jbrowse/core/TextSearch/BaseResults'
 import { SearchType } from '@jbrowse/core/data_adapters/BaseAdapter'
-import { RefNameAutocomplete } from '@jbrowse/plugin-linear-genome-view/'
+import { RefNameAutocomplete } from '@jbrowse/plugin-linear-genome-view'
 
 import { MultilevelLinearViewModel } from '../model'
 
@@ -60,7 +60,7 @@ const ImportForm = observer(
         label: regions[0]?.refName,
       })
 
-    const selectedRegion = option?.getLocation()
+    const selectedRegion = option?.getLocation() || option?.getLabel()
 
     useEffect(() => {
       const num = parseInt(numViews, 10)
@@ -102,7 +102,7 @@ const ImportForm = observer(
             model.setSearchResults(results, input.toLowerCase())
             return
           } else if (results?.length === 1) {
-            location = results[0].getLocation()
+            location = results[0].getLocation()!
             trackId = results[0].getTrackId()
           }
           model.navToLocString(location, selected[0])

src/MultilevelLinearView/components/MultilevelLinearView.tsx

@@ -124,7 +124,7 @@ const MultilevelLinearView = observer(
                 {model.views.map((view) => {
                   const { ReactComponent } = pluginManager.getViewType(
                     view.type,
-                  )
+                  )!
 
                   if (!model.initialized || !view.initialized) {
                     return null

src/MultilevelLinearView/model.ts

@@ -47,7 +47,7 @@ export default function stateModelFactory(pluginManager: PluginManager) {
           pluginManager.pluggableMstType('track', 'stateModel'),
         ),
         views: types.array(
-          pluginManager.getViewType('LinearGenomeMultilevelView')
+          pluginManager.getViewType('LinearGenomeMultilevelView')!
             .stateModel as LinearGenomeViewStateModel,
         ),
       }),
@@ -414,7 +414,7 @@ export default function stateModelFactory(pluginManager: PluginManager) {
         if (target.isAnchor === false && target.isOverview === false) {
           self.views.remove(target)
           session.notify(`A view has been closed`, 'info', {
-            name: 'undo',
+            name: 'undo' as any,
             onClick: () => {
               pluginManager.rootModel.history.undo()
             },

tsconfig.test.json

@@ -1,7 +1,7 @@
 {
   "extends": "./tsconfig.json",
   "compilerOptions": {
-    "rootDir": "./",
+    "rootDir": "./"
   },
-  "include": ["./jest.config.ts", "./jest.setup.ts"],
+  "include": ["./jest.config.ts", "./jest.setup.ts"]
 }