diff --git a/Makefile b/Makefile index c14e92a..8026a56 100644 --- a/Makefile +++ b/Makefile @@ -10,7 +10,7 @@ all: ${TARGETS} curl -L -O "https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-$(shell uname)-$(shell uname -m).sh" && bash Mambaforge-$(shell uname)-$(shell uname -m).sh -b -p mamba && rm "Mambaforge-$(shell uname)-$(shell uname -m).sh" && touch .mamba .tools: .mamba - export PATH="${PBASE}/mamba/bin:${PATH}" && mamba install -y -c conda-forge -c bioconda datamash samtools bcftools bedtools htslib delly alfred igv wally minimap2 nanoplot sniffles whatshap longshot ont-modkit && touch .tools + export PATH="${PBASE}/mamba/bin:${PATH}" && mamba install -y -c conda-forge -c bioconda datamash samtools bcftools bedtools htslib delly alfred igv wally minimap2 nanoplot sniffles whatshap longshot && touch .tools .rstats: .mamba .tools export PATH="${PBASE}/mamba/bin:${PATH}" && mamba install -y -c conda-forge -c bioconda bioconductor-genomicfeatures r-ggplot2 r-reshape2 r-gridextra r-cowplot bioconductor-dnacopy && touch .rstats