Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

cycles detected in cl-basic.obo, release v2025-01-08 #2898

Open
tutajm opened this issue Jan 10, 2025 · 0 comments
Open

cycles detected in cl-basic.obo, release v2025-01-08 #2898

tutajm opened this issue Jan 10, 2025 · 0 comments

Comments

@tutajm
Copy link

tutajm commented Jan 10, 2025

The specification for cl-basic.obo says that all relationships are guaranteed to be acyclic, to form a DAG. However, in the latest release it is not the case. Offending relationships (non-relevant lines removed):

[Term]
id: CL:0000584
name: enterocyte
relationship: RO:0002202 CL:4047019 ! develops from early enterocyte

[Term]
id: CL:4047019
name: early enterocyte
is_a: CL:0000584 ! enterocyte

Could you please remove this line: "relationship: RO:0002202 CL:4047019 ! develops from early enterocyte"? This will fix the problem.

Thank you very much,
Marek Tutaj
programmer/analyst in RGD, that uses ontologies in DAG format

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant