diff --git a/tests/test_concat_germline_vcfs.yml b/tests/test_concat_germline_vcfs.yml index b6795d0161..749c6404cb 100644 --- a/tests/test_concat_germline_vcfs.yml +++ b/tests/test_concat_germline_vcfs.yml @@ -2,7 +2,7 @@ command: nextflow run main.nf -profile test --input ./tests/csv/3.0/mapped_joint_bam.csv --concatenate_vcfs --tools deepvariant,freebayes,haplotypecaller,manta,mpileup,strelka,tiddit --step variant_calling --outdir results tags: - concatenate_vcfs -files: + files: - path: results/variant_calling/concat/testN/testN.deepvariant.germline.vcf.gz - path: results/variant_calling/concat/testT/testT.deepvariant.germline.vcf.gz - path: results/variant_calling/concat/testN/testN.deepvariant.germline.vcf.gz.tbi diff --git a/tests/test_normalize_vcfs.yml b/tests/test_normalize_vcfs.yml index b52a4194f5..25430fb576 100644 --- a/tests/test_normalize_vcfs.yml +++ b/tests/test_normalize_vcfs.yml @@ -3,7 +3,6 @@ tags: - normalize_vcfs files: -files: - path: results/variant_calling/normalized/testN/testN.deepvariant.norm.vcf.gz - path: results/variant_calling/normalized/testT/testT.deepvariant.norm.vcf.gz - path: results/variant_calling/normalized/testN/testN.deepvariant.norm.vcf.gz.tbi