From acd9b8aa3e845e7faff394dd2f565bf2d1349bdc Mon Sep 17 00:00:00 2001 From: Ben Sherman Date: Tue, 5 Nov 2024 09:22:57 +0100 Subject: [PATCH] Remove `params.outdir` in favor of `outputDir` Signed-off-by: Ben Sherman --- nextflow.config | 6 ------ nextflow_schema.json | 7 ------- 2 files changed, 13 deletions(-) diff --git a/nextflow.config b/nextflow.config index 1cda35e..e4e08c7 100755 --- a/nextflow.config +++ b/nextflow.config @@ -16,15 +16,9 @@ manifest { nextflowVersion = '>=23.10.0' } -/* - * config params - */ -params.outdir = 'results' - /* * configure outputs publishing */ -outputDir = params.outdir workflow.output.mode = 'copy' /* diff --git a/nextflow_schema.json b/nextflow_schema.json index 3d3fa2e..3ab3bb0 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -11,13 +11,6 @@ "fa_icon": "fas fa-terminal", "description": "Define where the pipeline should find input data and save output data.", "properties": { - "outdir": { - "type": "string", - "format": "directory-path", - "description": "The output directory where the results will be saved. You have to use absolute paths to storage on Cloud infrastructure.", - "fa_icon": "fas fa-folder-open", - "default": "results" - }, "reads": { "type": "string", "description": "The input read-pair files",