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I appreciate the authors for open-sourcing the RiboProfiler tool for the community. When I strictly followed the example to run the pre_qc_data function, I encountered the following issue:
I appreciate the authors for open-sourcing the RiboProfiler tool for the community. When I strictly followed the example to run the pre_qc_data function, I encountered the following issue:
out_file = paste(sample_name, ".qc.txt", sep = ""),
mapping_type = "transcriptome",
seq_type = "singleEnd")
Error in pre_qc_data(sam_file = sam_file, out_file = paste(sample_name, :
formal argument 2 matches multiple actual arguments
I tried specifying the arguments more explicitly but still faced issues:
longest_trans_file = 'longest_info.txt',
out_file_prefix = "qcdata",
mapping_type = "transcriptome",
seq_type = "singleEnd")
Error happens in Julia.
UndefVarError:
prepareQCdata_ontrans
not definedStacktrace:
[1] top-level scope
@ :0
[2] eval
@ .\boot.jl:370 [inlined]
[3] eval_string(x::String)
@ Main.JuliaCall C:\Users\Administrator\AppData\Local\R\win-library\4.3\JuliaCall\julia\setup.jl:203
[4] docall(call1::Ptr{Nothing})
@ Main.JuliaCall C:\Users\Administrator\AppData\Local\R\win-library\4.3\JuliaCall\julia\setup.jl:176
I look forward to any help from the authors in resolving this issue.
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