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Issue for pre_qc_data #1

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Mikebbbbb opened this issue Nov 12, 2024 · 0 comments
Open

Issue for pre_qc_data #1

Mikebbbbb opened this issue Nov 12, 2024 · 0 comments

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@Mikebbbbb
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Mikebbbbb commented Nov 12, 2024

I appreciate the authors for open-sourcing the RiboProfiler tool for the community. When I strictly followed the example to run the pre_qc_data function, I encountered the following issue:

  • pre_qc_data(sam_file = sam_file,
    out_file = paste(sample_name, ".qc.txt", sep = ""),
    mapping_type = "transcriptome",
    seq_type = "singleEnd")
    Error in pre_qc_data(sam_file = sam_file, out_file = paste(sample_name, :
    formal argument 2 matches multiple actual arguments

I tried specifying the arguments more explicitly but still faced issues:

  • pre_qc_data(sam_file = sam_file,
    longest_trans_file = 'longest_info.txt',
    out_file_prefix = "qcdata",
    mapping_type = "transcriptome",
    seq_type = "singleEnd")
    Error happens in Julia.
    UndefVarError: prepareQCdata_ontrans not defined
    Stacktrace:
    [1] top-level scope
    @ :0
    [2] eval
    @ .\boot.jl:370 [inlined]
    [3] eval_string(x::String)
    @ Main.JuliaCall C:\Users\Administrator\AppData\Local\R\win-library\4.3\JuliaCall\julia\setup.jl:203
    [4] docall(call1::Ptr{Nothing})
    @ Main.JuliaCall C:\Users\Administrator\AppData\Local\R\win-library\4.3\JuliaCall\julia\setup.jl:176

I look forward to any help from the authors in resolving this issue.

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