pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>com.hartwig</groupId>
    <artifactId>bamcomp</artifactId>
    <version>local-SNAPSHOT</version>
    <packaging>pom</packaging>

    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <junit.version>4.13.1</junit.version>
        <maven.compiler.source>8</maven.compiler.source>
        <maven.compiler.target>8</maven.compiler.target>
        <mockito.version>2.23.4</mockito.version>
        <assertj-core.version>3.8.0</assertj-core.version>
        <slf4j-api.version>1.7.25</slf4j-api.version>
        <commons-io.version>2.7</commons-io.version>
        <google-cloud.version>1.40.0</google-cloud.version>
        <commons-cli.version>1.4</commons-cli.version>
        <slf4j-log4j12.version>1.7.25</slf4j-log4j12.version>
        <failsafe.version>2.0.1</failsafe.version>
        <commons-lang3.version>3.9</commons-lang3.version>
        <picocli.version>4.2.0</picocli.version>
        <htsjdk.version>2.20.3</htsjdk.version>
    </properties>

    <scm>
        <url>https://github.com/hartwigmedical/bamcomp</url>
        <connection>scm:git:https://github.com/hartwigmedical/bamcomp.git</connection>
        <developerConnection>scm:git:git@github.com:hartwigmedicalfoundation/bamcomp.git</developerConnection>
    </scm>

    <modules>
        <module>app</module>
    </modules>

    <dependencyManagement>
        <dependencies>
            <dependency>
                <groupId>com.hartwig</groupId>
                <artifactId>app</artifactId>
                <version>local-SNAPSHOT</version>
            </dependency>
            <dependency>
                <groupId>org.slf4j</groupId>
                <artifactId>slf4j-api</artifactId>
                <version>${slf4j-api.version}</version>
            </dependency>
            <dependency>
                <groupId>commons-io</groupId>
                <artifactId>commons-io</artifactId>
                <version>${commons-io.version}</version>
            </dependency>
            <dependency>
                <groupId>org.apache.commons</groupId>
                <artifactId>commons-lang3</artifactId>
                <version>${commons-lang3.version}</version>
            </dependency>
            <dependency>
                <groupId>com.github.samtools</groupId>
                <artifactId>htsjdk</artifactId>
                <version>${htsjdk.version}</version>
            </dependency>
            <dependency>
                <groupId>info.picocli</groupId>
                <artifactId>picocli</artifactId>
                <version>${picocli.version}</version>
         </dependency>
            <dependency>
                <groupId>junit</groupId>
                <artifactId>junit</artifactId>
                <version>${junit.version}</version>
                <scope>test</scope>
            </dependency>
            <dependency>
                <groupId>org.assertj</groupId>
                <artifactId>assertj-core</artifactId>
                <version>${assertj-core.version}</version>
                <scope>test</scope>
            </dependency>
            <dependency>
                <groupId>org.mockito</groupId>
                <artifactId>mockito-core</artifactId>
                <version>${mockito.version}</version>
                <scope>test</scope>
            </dependency>
            <dependency>
                <groupId>org.slf4j</groupId>
                <artifactId>slf4j-log4j12</artifactId>
                <version>${slf4j-log4j12.version}</version>
                <scope>runtime</scope>
            </dependency>
        </dependencies>
    </dependencyManagement>

    <dependencies>
        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-api</artifactId>
        </dependency>
        <dependency>
            <groupId>junit</groupId>
            <artifactId>junit</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.assertj</groupId>
            <artifactId>assertj-core</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.mockito</groupId>
            <artifactId>mockito-core</artifactId>
            <scope>test</scope>
        </dependency>
    </dependencies>

    <build>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <version>3.0.2</version>
                <executions>
                    <execution>
                        <goals>
                            <goal>test-jar</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-scm-plugin</artifactId>
                <version>1.11.2</version>
                <executions>
                    <execution>
                        <goals>
                            <goal>tag</goal>
                        </goals>
                    </execution>
                </executions>
                <configuration>
                    <tag>${project.version}</tag>
                </configuration>
            </plugin>
        </plugins>
    </build>
</project>