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output from singularity-pyscenic - downstream analysis #588

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yulchen810 opened this issue Oct 19, 2024 · 0 comments
Open

output from singularity-pyscenic - downstream analysis #588

yulchen810 opened this issue Oct 19, 2024 · 0 comments
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@yulchen810
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Hi, team
I have finished pyscenic grn, ctx and aucell analysis in singularity container, and I get 3 files as below pictures. The input for singularity-pyscenic analysis is counts matrix extracted from seurat object, which have been annotated. The online tutorial are strating with loom file which has been filtered and clustering in python, and I tried this way but the result is a little different from seurat object.
My question is that can I combine the 3 output files with my seurat object (including metadata), I've been struggling with these for days. Thank you very much, I would be very grateful for any help.

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@yulchen810 yulchen810 added the question Further information is requested label Oct 19, 2024
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