environment.yml

# Dependencies marked with "(optional)" are not required for core functionality
# and can be commented out if there are conflicts.

name: morphx
channels:
  - pytorch
  - conda-forge
  - defaults
dependencies:
  # From -c pytorch
  - pytorch =1.1  # (version depends on elektronn3 revision)

  # From conda-forge and defaults
  - python >=3.7  # (3.6 should also work)
  - pip
  - m2r
  - ipython
  - h5py
  - matplotlib
  - tqdm
  - scipy
  - networkx
  - numpy
  - coloredlogs
  - scikit-learn
  - numba
  - openmesh-python
  - point_cloud_utils

  # For tests (optional):
  - pytest
  - pytest-runner
  - pytest-cov
  - pytest-forked

  # For docs (optional):
  - sphinx
  - sphinx_rtd_theme
  - sphinx-autodoc-typehints

  # Required dependencies that are not yet available via conda:
  - pip:
    - plyfile
    - open3d

    # Pre-release packages
    - git+https://github.com/ELEKTRONN/elektronn3.git@phil#egg=elektronn3