diff --git a/.github/workflows/ci-manifest.yml b/.github/workflows/ci-manifest.yml index 241c005f..9ef80cad 100644 --- a/.github/workflows/ci-manifest.yml +++ b/.github/workflows/ci-manifest.yml @@ -20,4 +20,4 @@ concurrency: jobs: manifest: name: "check-manifest" - uses: scitools/workflows/.github/workflows/ci-manifest.yml@2024.08.0 + uses: scitools/workflows/.github/workflows/ci-manifest.yml@2024.10.3 diff --git a/.github/workflows/ci-wheels.yml b/.github/workflows/ci-wheels.yml index 1174ae3f..05395068 100644 --- a/.github/workflows/ci-wheels.yml +++ b/.github/workflows/ci-wheels.yml @@ -120,7 +120,7 @@ jobs: runs-on: ubuntu-latest # upload to Test PyPI for every commit on main branch # and check for the SciTools repo - if: github.event_name == 'push' && github.event.ref == 'refs/heads/main' && github.repository_owner == 'SciTools-incubator' + if: github.event_name == 'push' && github.event.ref == 'refs/heads/main' && github.repository_owner == 'SciTools' steps: - uses: actions/download-artifact@v4 with: @@ -140,7 +140,7 @@ jobs: name: "Publish to PyPI" runs-on: ubuntu-latest # upload to PyPI for every tag starting with 'v' - if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v') && github.repository_owner == 'SciTools-incubator' + if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v') && github.repository_owner == 'SciTools' steps: - uses: actions/download-artifact@v4 with: diff --git a/.github/workflows/refresh-lockfiles.yml b/.github/workflows/refresh-lockfiles.yml index d4d665cd..47b4d551 100644 --- a/.github/workflows/refresh-lockfiles.yml +++ b/.github/workflows/refresh-lockfiles.yml @@ -25,15 +25,26 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 + - name: install nox run: | source $CONDA/bin/activate base conda install -y -c conda-forge nox pyyaml + - name: generate lockfiles run: $CONDA/bin/nox --session update_lockfiles + + - name: generate token + uses: tibdex/github-app-token@3beb63f4bd073e61482598c45c71c1019b59b73a + id: generate-token + with: + app_id: ${{ secrets.AUTH_APP_ID }} + private_key: ${{ secrets.AUTH_APP_PRIVATE_KEY }} + - name: create pull request - uses: peter-evans/create-pull-request@c5a7806660adbe173f04e3e038b0ccdcd758773c + uses: peter-evans/create-pull-request@5e914681df9dc83aa4e4905692ca88beb2f9e91f with: + token: ${{ steps.generate-token.outputs.token }} commit-message: Updated environment lockfiles delete-branch: true branch: auto-update-lockfiles diff --git a/.github/workflows/stale.yml b/.github/workflows/stale.yml index 7dcabc69..78e8ef1a 100644 --- a/.github/workflows/stale.yml +++ b/.github/workflows/stale.yml @@ -13,12 +13,12 @@ jobs: - uses: actions/stale@v9.0.0 with: repo-token: ${{ secrets.GITHUB_TOKEN }} - stale-issue-message: '@SciTools-incubator/esmf-regrid-devs This issue is stale due to a lack of activity in the last 180 days. Remove stale label or comment, otherwise this issue will close automatically in 14 days time.' - stale-pr-message: '@SciTools-incubator/esmf-regrid-devs This pull-request is stale due to a lack of activity in the last 180 days. Remove stale label or comment, otherwise this pull-request will close automatically in 14 days time.' + stale-issue-message: '@SciTools/esmf-regrid-devs This issue is stale due to a lack of activity in the last 180 days. Remove stale label or comment, otherwise this issue will close automatically in 14 days time.' + stale-pr-message: '@SciTools/esmf-regrid-devs This pull-request is stale due to a lack of activity in the last 180 days. Remove stale label or comment, otherwise this pull-request will close automatically in 14 days time.' stale-issue-label: 'Stale: Closure warning' stale-pr-label: 'Stale: Closure warning' - close-issue-message: '@SciTools-incubator/esmf-regrid-devs This stale issue has been automatically closed due to no community activity' - close-pr-message: '@SciT@SciTools-incubator/esmf-regrid-devs This stale pull-request has been automatically closed due to no community activity' + close-issue-message: '@SciTools/esmf-regrid-devs This stale issue has been automatically closed due to no community activity' + close-pr-message: '@SciT@SciTools/esmf-regrid-devs This stale pull-request has been automatically closed due to no community activity' close-issue-label: 'Stale: Closed' close-pr-label: 'Stale: Closed' exempt-issue-labels: 'Status: Blocked,Status: Decision needed,Status: Needs info,Status: Stalled,Status: Will not fix,Status: Work in progress' diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 6dd0ae75..851fc5ad 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -2,7 +2,7 @@ # See https://pre-commit.com/hooks.html for more hooks repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: 'v4.6.0' + rev: 'v5.0.0' hooks: # Prevent giant files from being committed. - id: check-added-large-files @@ -17,7 +17,7 @@ repos: # Don't commit to master branch. - id: no-commit-to-branch - repo: https://github.com/psf/black - rev: '24.8.0' + rev: '24.10.0' hooks: - id: black # Force black to run on whole repo, using settings from pyproject.toml diff --git a/CHANGELOG.md b/CHANGELOG.md index 3ac98733..edaabbc9 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,16 +11,16 @@ and this project adheres to [Semantic Versioning](http://semver.org/). ### Fixed -- [PR#385](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/385) +- [PR#385](https://github.com/SciTools/iris-esmf-regrid/pull/385) Fixed bug when connectivities are described by non-masked arrays. [@stephenworsley](https://github.com/stephenworsley) -- [PR#387](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/387) +- [PR#387](https://github.com/SciTools/iris-esmf-regrid/pull/387) Fixed incompatibilities with changes to iris API in v3.10.0. [@stephenworsley](https://github.com/stephenworsley) ### Added -- [PR#276](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/276) +- [PR#276](https://github.com/SciTools/iris-esmf-regrid/pull/276) Allow regridding for grids defined on coordinates without bounds for nearest neighbour and bilinear methods. [@stephenworsley](https://github.com/stephenworsley) @@ -29,33 +29,33 @@ and this project adheres to [Semantic Versioning](http://semver.org/). ### Added -- [PR#357](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/357) +- [PR#357](https://github.com/SciTools/iris-esmf-regrid/pull/357) Added support for saving and loading of `ESMFAreaWeighted`, `ESMFBilinear` and `ESMFNearest` regridders. [@stephenworsley](https://github.com/stephenworsley) -- [PR#319](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/319) +- [PR#319](https://github.com/SciTools/iris-esmf-regrid/pull/319) Added `CITATION.cff`. [@bjlittle](https://github.com/bjlittle) ### Changed -- [PR#361](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/361) +- [PR#361](https://github.com/SciTools/iris-esmf-regrid/pull/361) Moved the code for running benchmarks to `bm_runner.py` in line with iris benchmarks. [@stephenworsley](https://github.com/stephenworsley) -- [PR#293](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/293) +- [PR#293](https://github.com/SciTools/iris-esmf-regrid/pull/293) Enumerated method and normtype input. [@ESadek-MO](https://github.com/ESadek-MO) ### Fixed -- [PR#239](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/239) +- [PR#239](https://github.com/SciTools/iris-esmf-regrid/pull/239) Ensured dtype is preserved by regridding. [@stephenworsley](https://github.com/stephenworsley) -- [PR#353](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/353) +- [PR#353](https://github.com/SciTools/iris-esmf-regrid/pull/353) Fixed a bug which caused errors with ESMF versions 8.6 and higher. [@stephenworsley](https://github.com/stephenworsley) -- [PR#338](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/338) +- [PR#338](https://github.com/SciTools/iris-esmf-regrid/pull/338) Fixed a potential memory leak when creating regridders. [@stephenworsley](https://github.com/stephenworsley) @@ -63,17 +63,17 @@ and this project adheres to [Semantic Versioning](http://semver.org/). ### Added -- [PR#178](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/178) +- [PR#178](https://github.com/SciTools/iris-esmf-regrid/pull/178) Added support for coordinate systems with non-degree type units. [@stephenworsley](https://github.com/stephenworsley) -- [PR#311](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/311) +- [PR#311](https://github.com/SciTools/iris-esmf-regrid/pull/311) Added support for Mesh to Mesh regridding. [@HGWright](https://github.com/HGWright) ### Fixed -- [PR#301](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/301) +- [PR#301](https://github.com/SciTools/iris-esmf-regrid/pull/301) Fixed a bug which caused errors when regridding with the node locations of a mesh whose face_node_connectivity had non-zero start_index. [@stephenworsley](https://github.com/stephenworsley) @@ -82,7 +82,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/). ### Added -- [PR#289](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/289) +- [PR#289](https://github.com/SciTools/iris-esmf-regrid/pull/289) Added the ability to regrid onto a Mesh as a target instead of a Cube. [@stephenworsley](https://github.com/stephenworsley) @@ -90,7 +90,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/). ### Added -- [PR#198](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/198) +- [PR#198](https://github.com/SciTools/iris-esmf-regrid/pull/198) As a result of refactoring regridders to all derive from the same class, `_ESMFRegridder`, functionality has been added to the `ESMFAreaWeighted` scheme and a new scheme, `ESMFBilinear`, has been added. @@ -99,17 +99,17 @@ and this project adheres to [Semantic Versioning](http://semver.org/). these grids with the `src_resolution` and `tgt_resolution` keywords. [@stephenworsley](https://github.com/stephenworsley) with extensive review work from [@trexfeathers](https://github.com/trexfeathers) -- [PR#266](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/266) +- [PR#266](https://github.com/SciTools/iris-esmf-regrid/pull/266) Added Nearest neighbour regridding. [@stephenworsley](https://github.com/stephenworsley) [@HGWright](https://github.com/HGWright) -- [PR#272](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/272) +- [PR#272](https://github.com/SciTools/iris-esmf-regrid/pull/272) Add support for Python 3.11. [@stephenworsley](https://github.com/stephenworsley) ### Changed -- [PR#198](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/198) +- [PR#198](https://github.com/SciTools/iris-esmf-regrid/pull/198) Refactor regridders to all derive from the same class `_ESMFRegridder`. For the sake of consistency, the resolution keyword in `GridToMeshESMFRegridder` and `MeshToGridESMFRegridder` have been @@ -119,13 +119,13 @@ and this project adheres to [Semantic Versioning](http://semver.org/). ### Removed -- [PR#272](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/272) +- [PR#272](https://github.com/SciTools/iris-esmf-regrid/pull/272) Remove support for Python 3.8. [@stephenworsley](https://github.com/stephenworsley) ### Fixed -- [PR#258](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/258) +- [PR#258](https://github.com/SciTools/iris-esmf-regrid/pull/258) Allow the documentation to build properly. [@zklaus](https://github.com/zklaus) @@ -133,27 +133,27 @@ and this project adheres to [Semantic Versioning](http://semver.org/). ### Added -- [PR#217](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/217) +- [PR#217](https://github.com/SciTools/iris-esmf-regrid/pull/217) Changed the behaviour of coordinate fetching to allow Cubes with both 1D DimCoords and 2D AuxCoords. In this case the DimCoords are prioritised. [@stephenworsley](https://github.com/stephenworsley) -- [PR#220](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/220) +- [PR#220](https://github.com/SciTools/iris-esmf-regrid/pull/220) Matured the benchmarking architecture in line with the latest setup in SciTools/iris. [@trexfeathers](https://github.com/trexfeathers) -- [PR#241](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/241) +- [PR#241](https://github.com/SciTools/iris-esmf-regrid/pull/241) Fixed compatibility with esmpy 8.4. [@stephenworsley](https://github.com/stephenworsley) with help from [@bjlittle](https://github.com/bjlittle) and [@valeriupredoi](https://github.com/valeriupredoi) -- [PR#219](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/219) +- [PR#219](https://github.com/SciTools/iris-esmf-regrid/pull/219) Added support for 2D AuxCoords with discontiguities under masked values with the use_src_mask and use_tgt_mask keywords. [@stephenworsley](https://github.com/stephenworsley)with extensive review work from [@trexfeathers](https://github.com/trexfeathers) ### Fixed -- [PR#242](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/242) +- [PR#242](https://github.com/SciTools/iris-esmf-regrid/pull/242) Fixed an issue which caused regridding to curvilinear grids with lazy data to fail. [@stephenworsley](https://github.com/stephenworsley) @@ -165,16 +165,16 @@ curvilinear grids and low resolution grids. ### Added -- [PR#148](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/148) +- [PR#148](https://github.com/SciTools/iris-esmf-regrid/pull/148) Added support for Bilinear regridding for unstructured regridding. -- [PR#165](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/165) +- [PR#165](https://github.com/SciTools/iris-esmf-regrid/pull/165) Added RefinedGridInfo and resolution keyword for unstructured regridders. -- [PR#166](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/166) +- [PR#166](https://github.com/SciTools/iris-esmf-regrid/pull/166) Made weights array handling more robust for different formats of pre-computed weights matrices. -- [PR#175](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/175) +- [PR#175](https://github.com/SciTools/iris-esmf-regrid/pull/175) Add curvilinear support for unstructured regridders. -- [PR#208](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/208) +- [PR#208](https://github.com/SciTools/iris-esmf-regrid/pull/208) Unpin Python. ## [0.4] - 2022-02-24 @@ -183,24 +183,24 @@ This release added the ability to regrid data stored on a UGRID mesh. ### Added -- [PR#31](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/31) - [PR#32](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/32) - [PR#36](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/36) - [PR#39](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/39) - [PR#46](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/46) - [PR#55](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/55) - [PR#96](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/96) +- [PR#31](https://github.com/SciTools/iris-esmf-regrid/pull/31) + [PR#32](https://github.com/SciTools/iris-esmf-regrid/pull/32) + [PR#36](https://github.com/SciTools/iris-esmf-regrid/pull/36) + [PR#39](https://github.com/SciTools/iris-esmf-regrid/pull/39) + [PR#46](https://github.com/SciTools/iris-esmf-regrid/pull/46) + [PR#55](https://github.com/SciTools/iris-esmf-regrid/pull/55) + [PR#96](https://github.com/SciTools/iris-esmf-regrid/pull/96) Added the unstructured regridders `GridToMeshESMFRegridder` and `MeshToGridESMFRegridder`. [@stephenworsley](https://github.com/stephenworsley) with extensive review work from [@abooton](https://github.com/abooton) and [@jamesp](https://github.com/jamesp) with benchmarking help from [@trexfeathers](https://github.com/trexfeathers) -- [PR#130](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/130) - [PR#137](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/137) +- [PR#130](https://github.com/SciTools/iris-esmf-regrid/pull/130) + [PR#137](https://github.com/SciTools/iris-esmf-regrid/pull/137) Added functions for saving of the unstructured regridders. [@stephenworsley](https://github.com/stephenworsley) -- [PR#155](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/155) +- [PR#155](https://github.com/SciTools/iris-esmf-regrid/pull/155) Enabled Sphinx and RTD for automatically rendering the API. [@trexfeathers](https://github.com/trexfeathers) @@ -210,10 +210,10 @@ The major change with this version was the addition of the ability to regrid curvilinear grids (i.e. grids with 2D arrays of coordinates). ### Added -- [PR#125](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/125) +- [PR#125](https://github.com/SciTools/iris-esmf-regrid/pull/125) Added support for curvilinear grids, i.e. cubes with 2D lat/lon coords. [@stephenworsley](https://github.com/stephenworsley) -- [PR#124](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/124) +- [PR#124](https://github.com/SciTools/iris-esmf-regrid/pull/124) Improved generation of benchmark data to allow data to be generated from a common version/environment. [@trexfeathers](https://github.com/trexfeathers) @@ -225,22 +225,22 @@ This defers the calculation of regridding to the realisation of the data when the data is a dask array. Calculations may be parallelised via dask. ### Added -- [PR#80](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/80) +- [PR#80](https://github.com/SciTools/iris-esmf-regrid/pull/80) Added support for lazy regridding, this showed an improvement in the performance of the regridding benchmarks. [@stephenworsley](https://github.com/stephenworsley) -- [PR#79](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/79) +- [PR#79](https://github.com/SciTools/iris-esmf-regrid/pull/79) Added support for benchmarks on the CI. [@trexfeathers](https://github.com/trexfeathers) -- [PR#98](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/98) +- [PR#98](https://github.com/SciTools/iris-esmf-regrid/pull/98) Added benchmarks for regridding with realised data. [@stephenworsley](https://github.com/stephenworsley) -- [PR#100](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/100) +- [PR#100](https://github.com/SciTools/iris-esmf-regrid/pull/100) Added benchmarks for regridding with lazy data. [@stephenworsley](https://github.com/stephenworsley) ### Fixed -- [PR#92](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/92) +- [PR#92](https://github.com/SciTools/iris-esmf-regrid/pull/92) Fixed an issue with directory naming. [@lbdreyer](https://github.com/lbdreyer) -- [PR#83](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/83) +- [PR#83](https://github.com/SciTools/iris-esmf-regrid/pull/83) Added missing docstrings. [@stephenworsley](https://github.com/stephenworsley) diff --git a/CITATION.cff b/CITATION.cff index 1a44df63..78af2971 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -6,7 +6,8 @@ authors: orcid: "https://orcid.org/0009-0008-1704-8445" title: "iris-esmf-regrid" abstract: "A collection of structured and unstructured ESMF regridding schemes for Iris" -repository-code: "https://github.com/SciTools-incubator/iris-esmf-regrid" +repository-code: "https://github.com/SciTools/iris-esmf-regrid" license: "BSD-3-Clause" license-url: "https://spdx.org/licenses/BSD-3-Clause.html" +doi: "10.5281/zenodo.11401116" type: "software" diff --git a/LICENSE b/LICENSE index 73385527..96d3bb64 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,6 @@ BSD 3-Clause License -Copyright (c) 2020 - 2022, SciTools-incubator +Copyright (c) 2020 - 2024, SciTools All rights reserved. Redistribution and use in source and binary forms, with or without diff --git a/README.md b/README.md index f92a5c45..3e8287c8 100644 --- a/README.md +++ b/README.md @@ -1,14 +1,15 @@ # iris-esmf-regrid -[![Build Status](https://api.cirrus-ci.com/github/SciTools-incubator/iris-esmf-regrid.svg)](https://cirrus-ci.com/github/SciTools-incubator/iris-esmf-regrid) +[![Build Status](https://api.cirrus-ci.com/github/SciTools/iris-esmf-regrid.svg)](https://cirrus-ci.com/github/SciTools/iris-esmf-regrid) [![Documentation Status](https://readthedocs.org/projects/iris-esmf-regrid/badge/?version=latest)](https://iris-esmf-regrid.readthedocs.io/en/latest/?badge=latest) -[![ci-citation](https://github.com/SciTools-incubator/iris-esmf-regrid/actions/workflows/ci-citation.yml/badge.svg)](https://github.com/SciTools-incubator/iris-esmf-regrid/actions/workflows/ci-citation.yml) -[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/SciTools-incubator/iris-esmf-regrid/main.svg)](https://results.pre-commit.ci/latest/github/SciTools-incubator/iris-esmf-regrid/master) -[![codecov](https://codecov.io/gh/SciTools-incubator/iris-esmf-regrid/branch/main/graph/badge.svg?token=PKBXEHOZFT)](https://codecov.io/gh/SciTools-incubator/iris-esmf-regrid) +[![ci-citation](https://github.com/SciTools/iris-esmf-regrid/actions/workflows/ci-citation.yml/badge.svg)](https://github.com/SciTools/iris-esmf-regrid/actions/workflows/ci-citation.yml) +[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/SciTools/iris-esmf-regrid/main.svg)](https://results.pre-commit.ci/latest/github/SciTools/iris-esmf-regrid/master) +[![codecov](https://codecov.io/gh/SciTools/iris-esmf-regrid/branch/main/graph/badge.svg?token=PKBXEHOZFT)](https://codecov.io/gh/SciTools/iris-esmf-regrid) [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black) -[![License](https://img.shields.io/github/license/SciTools-incubator/iris-esmf-regrid)](https://github.com/SciTools-incubator/iris-esmf-regrid/blob/main/LICENSE) -[![Contributors](https://img.shields.io/github/contributors/SciTools-incubator/iris-esmf-regrid)](https://github.com/SciTools-incubator/iris-esmf-regrid/graphs/contributors) -![Mark stale issues and pull requests](https://github.com/SciTools-incubator/iris-esmf-regrid/workflows/Mark%20stale%20issues%20and%20pull%20requests/badge.svg) +[![License](https://img.shields.io/github/license/SciTools/iris-esmf-regrid)](https://github.com/SciTools/iris-esmf-regrid/blob/main/LICENSE) +[![Contributors](https://img.shields.io/github/contributors/SciTools/iris-esmf-regrid)](https://github.com/SciTools/iris-esmf-regrid/graphs/contributors) +![Mark stale issues and pull requests](https://github.com/SciTools/iris-esmf-regrid/workflows/Mark%20stale%20issues%20and%20pull%20requests/badge.svg) +[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.11401116.svg)](https://doi.org/10.5281/zenodo.11401116) --- diff --git a/benchmarks/asv.conf.json b/benchmarks/asv.conf.json index 782f92c0..a5aa95c0 100644 --- a/benchmarks/asv.conf.json +++ b/benchmarks/asv.conf.json @@ -1,10 +1,10 @@ { "version": 1, "project": "esmf_regrid", - "project_url": "https://github.com/SciTools-incubator/iris-esmf-regrid", + "project_url": "https://github.com/SciTools/iris-esmf-regrid", "repo": "..", "environment_type": "conda-delegated", - "show_commit_url": "https://github.com/SciTools-incubator/iris-esmf-regrid/commit/", + "show_commit_url": "https://github.com/SciTools/iris-esmf-regrid/commit/", "branches": ["upstream/main"], "build_command": [ "python setup.py build", diff --git a/docs/src/conf.py b/docs/src/conf.py index b042f810..2534f9b5 100644 --- a/docs/src/conf.py +++ b/docs/src/conf.py @@ -5,6 +5,7 @@ """ from datetime import datetime +import locale import os from pathlib import Path import re @@ -26,6 +27,7 @@ os.environ["ESMFMKFILE"] = f"{rtd_conda_prefix}/lib/esmf.mk" os.environ["PROJ_DATA"] = f"{rtd_conda_prefix}/share/proj" os.environ["PROJ_NETWORK"] = "OFF" + locale.setlocale(locale.LC_NUMERIC, "C") # -- Project information ----------------------------------------------------- @@ -35,7 +37,7 @@ copyright_years = f"2020 - {datetime.now().year}" project = "iris-esmf-regrid" -copyright = f"{copyright_years}, SciTools-incubator" +copyright = f"{copyright_years}, SciTools" author = "iris-esmf-regrid Contributors" # The full version, including alpha/beta/rc tags @@ -105,12 +107,12 @@ def _dotv(version): html_theme = "pydata_sphinx_theme" html_theme_options = { - "github_url": "https://github.com/SciTools-incubator/iris-esmf-regrid", + "github_url": "https://github.com/SciTools/iris-esmf-regrid", "show_prev_next": False, "icon_links": [ { "name": "Support", - "url": "https://github.com/SciTools-incubator/iris-esmf-regrid/discussions", + "url": "https://github.com/SciTools/iris-esmf-regrid/discussions", "icon": "fa fa-comments fa-fw", } ], @@ -141,10 +143,10 @@ def _dotv(version): extlinks = { "issue": ( - "https://github.com/SciTools-incubator/iris-esmf-regrid/issues/%s", + "https://github.com/SciTools/iris-esmf-regrid/issues/%s", "Issue #", ), - "pull": ("https://github.com/SciTools-incubator/iris-esmf-regrid/pull/%s", "PR #"), + "pull": ("https://github.com/SciTools/iris-esmf-regrid/pull/%s", "PR #"), } diff --git a/docs/src/whatsnew/index.rst b/docs/src/whatsnew/index.rst index adeae117..a67e20df 100644 --- a/docs/src/whatsnew/index.rst +++ b/docs/src/whatsnew/index.rst @@ -4,4 +4,4 @@ What's New? A proper whatsnew is under development, please consult the Changelog_. -.. _Changelog: https://github.com/SciTools-incubator/iris-esmf-regrid/blob/main/CHANGELOG.md \ No newline at end of file +.. _Changelog: https://github.com/SciTools/iris-esmf-regrid/blob/main/CHANGELOG.md \ No newline at end of file diff --git a/esmf_regrid/experimental/io.py b/esmf_regrid/experimental/io.py index 0163cccb..2c285bde 100644 --- a/esmf_regrid/experimental/io.py +++ b/esmf_regrid/experimental/io.py @@ -311,10 +311,12 @@ def load_regridder(filename): """ Load a regridder scheme instance. - Loads either a - :class:`~esmf_regrid.experimental.unstructured_scheme.GridToMeshESMFRegridder` - or a - :class:`~esmf_regrid.experimental.unstructured_scheme.MeshToGridESMFRegridder`. + Loads any of the regridder classes, i.e. + :class:`~esmf_regrid.experimental.unstructured_scheme.GridToMeshESMFRegridder`, + :class:`~esmf_regrid.experimental.unstructured_scheme.MeshToGridESMFRegridder`, + :class:`~esmf_regrid.schemes.ESMFAreaWeightedRegridder`, + :class:`~esmf_regrid.schemes.ESMFBilinearRegridder` or + :class:`~esmf_regrid.schemes.ESMFNearestRegridder`. Parameters ---------- @@ -323,7 +325,7 @@ def load_regridder(filename): Returns ------- - :class:`~esmf_regrid.experimental.unstructured_scheme.GridToMeshESMFRegridder` or :class:`~esmf_regrid.experimental.unstructured_scheme.MeshToGridESMFRegridder` + :class:`~esmf_regrid.schemes._ESMFRegridder` """ with _load_context(): cubes = iris.load(filename) diff --git a/esmf_regrid/tests/unit/experimental/io/test_round_tripping.py b/esmf_regrid/tests/unit/experimental/io/test_round_tripping.py index c0e78a69..30d594a7 100644 --- a/esmf_regrid/tests/unit/experimental/io/test_round_tripping.py +++ b/esmf_regrid/tests/unit/experimental/io/test_round_tripping.py @@ -184,7 +184,7 @@ def test_grid_to_mesh_round_trip(tmp_path, method, regridder): assert np.array_equal(original_matrix.todense(), loaded_matrix.todense()) # Demonstrate regridding still gives the same results. - src_data = ma.arange(np.product(src.data.shape)).reshape(src.data.shape) + src_data = ma.arange(np.prod(src.data.shape)).reshape(src.data.shape) src_data[0, 0] = ma.masked src.data = src_data # TODO: make this a cube comparison when mesh comparison becomes available. @@ -260,7 +260,7 @@ def test_grid_to_mesh_curvilinear_round_trip(tmp_path, regridder): _compare_ignoring_var_names(original_rg._src[1], loaded_rg._src[1]) # Demonstrate regridding still gives the same results. - src_data = ma.arange(np.product(src.data.shape)).reshape(src.data.shape) + src_data = ma.arange(np.prod(src.data.shape)).reshape(src.data.shape) src_data[0, 0] = ma.masked src.data = src_data # TODO: make this a cube comparison when mesh comparison becomes available. @@ -342,7 +342,7 @@ def test_mesh_to_grid_round_trip(tmp_path, method, regridder): assert np.array_equal(original_matrix.todense(), loaded_matrix.todense()) # Demonstrate regridding still gives the same results. - src_data = ma.arange(np.product(src.data.shape)).reshape(src.data.shape) + src_data = ma.arange(np.prod(src.data.shape)).reshape(src.data.shape) src_data[0] = ma.masked src.data = src_data original_result = original_rg(src).data @@ -417,7 +417,7 @@ def test_mesh_to_grid_curvilinear_round_trip(tmp_path, regridder): _compare_ignoring_var_names(original_rg._tgt[1], loaded_rg._tgt[1]) # Demonstrate regridding still gives the same results. - src_data = ma.arange(np.product(src.data.shape)).reshape(src.data.shape) + src_data = ma.arange(np.prod(src.data.shape)).reshape(src.data.shape) src_data[0] = ma.masked src.data = src_data original_result = original_rg(src).data diff --git a/pyproject.toml b/pyproject.toml index 6e662229..c913aa48 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -39,9 +39,9 @@ name = "esmf_regrid" requires-python = ">=3.10" [project.urls] -Code = "https://github.com/SciTools-incubator/iris-esmf-regrid" +Code = "https://github.com/SciTools/iris-esmf-regrid" Docs = "https://iris-esmf-regrid.readthedocs.io/en/stable" -Issues = "https://github.com/SciTools-incubator/iris-esmf-regrid/issues" +Issues = "https://github.com/SciTools/iris-esmf-regrid/issues" [tool.black] line-length = 88 diff --git a/requirements/locks/py310-linux-64.lock b/requirements/locks/py310-linux-64.lock index 5bd0faef..e7970845 100644 --- a/requirements/locks/py310-linux-64.lock +++ b/requirements/locks/py310-linux-64.lock @@ -1,204 +1,212 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: a304131f0478025a1c2610530b18c9f1f79cf447f036eb2589831cc0e573bdfc +# input_hash: 790559b99df5a20e9dafcfbbe049f481a7d855d8ac8a73a971cd5d8b7969e8ef @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 -https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.7.4-hbcca054_0.conda#23ab7665c5f63cfb9f1f6195256daac6 +https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.8.30-hbcca054_0.conda#c27d1c142233b5bc9ca570c6e2e0c244 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