packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2024},
  url = {https://www.R-project.org/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2024},
  note = {R package version 0.41},
  url = {https://github.com/rstudio/bookdown},
}

@Manual{R-desc,
  title = {desc: Manipulate DESCRIPTION Files},
  author = {Gábor Csárdi and Kirill Müller and Jim Hester},
  year = {2023},
  note = {R package version 1.4.3},
  url = {https://desc.r-lib.org/},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller and Davis Vaughan},
  year = {2023},
  note = {R package version 1.1.4},
  url = {https://dplyr.tidyverse.org},
}

@Manual{R-DT,
  title = {DT: A Wrapper of the JavaScript Library DataTables},
  author = {Yihui Xie and Joe Cheng and Xianying Tan},
  year = {2024},
  note = {R package version 0.33},
  url = {https://github.com/rstudio/DT},
}

@Manual{R-fasstr,
  title = {fasstr: Analyze, Summarize, and Visualize Daily Streamflow Data},
  author = {Jon Goetz and Carl James Schwarz},
  year = {2024},
  note = {R package version 0.5.3},
  url = {https://bcgov.github.io/fasstr/},
}

@Manual{R-fishbc,
  title = {fishbc: Fishes of British Columbia},
  author = {Evan Amies-Galonski and Joe Thorley and Nadine Hussein},
  year = {2021},
  note = {R package version 0.2.1},
  url = {https://github.com/poissonconsulting/fishbc},
}

@Manual{R-forcats,
  title = {forcats: Tools for Working with Categorical Variables (Factors)},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 1.0.0},
  url = {https://forcats.tidyverse.org/},
}

@Manual{R-fpr,
  title = {fpr: Fish Passage Data Wrangling and Reporting Functions},
  author = {Allan Irvine},
  note = {R package version 1.2.0},
  url = {https://github.com/NewGraphEnvironment/fpr},
  year = {2024},
}

@Manual{R-ggdark,
  title = {ggdark: Dark Mode for ggplot2 Themes},
  author = {Neal Grantham},
  year = {2019},
  note = {R package version 0.2.1},
  url = {https://CRAN.R-project.org/package=ggdark},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington and Teun {van den Brand}},
  year = {2024},
  note = {R package version 3.5.1},
  url = {https://ggplot2.tidyverse.org},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2024},
  note = {R package version 1.49},
  url = {https://yihui.org/knitr/},
}

@Manual{R-lubridate,
  title = {lubridate: Make Dealing with Dates a Little Easier},
  author = {Vitalie Spinu and Garrett Grolemund and Hadley Wickham},
  year = {2023},
  note = {R package version 1.9.3},
  url = {https://lubridate.tidyverse.org},
}

@Manual{R-pagedown,
  title = {pagedown: Paginate the HTML Output of R Markdown with CSS for Print},
  author = {Yihui Xie and Romain Lesur and Brent Thorne and Xianying Tan},
  year = {2024},
  note = {R package version 0.21},
  url = {https://github.com/rstudio/pagedown},
}

@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Hadley Wickham and Lionel Henry},
  year = {2023},
  note = {R package version 1.0.2},
  url = {https://purrr.tidyverse.org/},
}

@Manual{R-readr,
  title = {readr: Read Rectangular Text Data},
  author = {Hadley Wickham and Jim Hester and Jennifer Bryan},
  year = {2024},
  note = {R package version 2.1.5},
  url = {https://readr.tidyverse.org},
}

@Manual{R-readwritesqlite,
  title = {readwritesqlite: Enhanced Reading and Writing for SQLite Databases},
  author = {Joe Thorley},
  year = {2022},
  note = {R package version 0.2.0},
  url = {https://github.com/poissonconsulting/readwritesqlite},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Christophe Dervieux and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2024},
  note = {R package version 2.28},
  url = {https://github.com/rstudio/rmarkdown},
}

@Manual{R-RPostgres,
  title = {RPostgres: C++ Interface to PostgreSQL},
  author = {Hadley Wickham and Jeroen Ooms and Kirill Müller},
  year = {2024},
  note = {R package version 1.4.7},
  url = {https://rpostgres.r-dbi.org},
}

@Manual{R-sf,
  title = {sf: Simple Features for R},
  author = {Edzer Pebesma},
  year = {2024},
  note = {R package version 1.0-19},
  url = {https://r-spatial.github.io/sf/},
}

@Manual{R-stringr,
  title = {stringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 1.5.1},
  url = {https://stringr.tidyverse.org},
}

@Manual{R-tibble,
  title = {tibble: Simple Data Frames},
  author = {Kirill Müller and Hadley Wickham},
  year = {2023},
  note = {R package version 3.2.1},
  url = {https://tibble.tidyverse.org/},
}

@Manual{R-tidyhydat,
  title = {tidyhydat: Extract and Tidy Canadian Hydrometric Data},
  author = {Sam Albers},
  year = {2024},
  note = {R package version 0.7.0},
  url = {https://docs.ropensci.org/tidyhydat/},
}

@Manual{R-tidyr,
  title = {tidyr: Tidy Messy Data},
  author = {Hadley Wickham and Davis Vaughan and Maximilian Girlich},
  year = {2024},
  note = {R package version 1.3.1},
  url = {https://tidyr.tidyverse.org},
}

@Manual{R-tidyverse,
  title = {tidyverse: Easily Install and Load the Tidyverse},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 2.0.0},
  url = {https://tidyverse.tidyverse.org},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  isbn = {978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
}

@Article{lubridate2011,
  title = {Dates and Times Made Easy with {lubridate}},
  author = {Garrett Grolemund and Hadley Wickham},
  journal = {Journal of Statistical Software},
  year = {2011},
  volume = {40},
  number = {3},
  pages = {1--25},
  url = {https://www.jstatsoft.org/v40/i03/},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  isbn = {9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  isbn = {9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}

@Book{sf2023,
  author = {Edzer Pebesma and Roger Bivand},
  title = {{Spatial Data Science: With applications in R}},
  year = {2023},
  publisher = {{Chapman and Hall/CRC}},
  url = {https://r-spatial.org/book/},
  doi = {10.1201/9780429459016},
}

@Article{sf2018,
  author = {Edzer Pebesma},
  title = {{Simple Features for R: Standardized Support for Spatial Vector Data}},
  year = {2018},
  journal = {{The R Journal}},
  doi = {10.32614/RJ-2018-009},
  url = {https://doi.org/10.32614/RJ-2018-009},
  pages = {439--446},
  volume = {10},
  number = {1},
}

@Article{tidyhydat2017,
  title = {tidyhydat: Extract and Tidy Canadian Hydrometric Data},
  author = {Sam Albers},
  doi = {10.21105/joss.00511},
  url = {http://dx.doi.org/10.21105/joss.00511},
  year = {2017},
  publisher = {The Open Journal},
  volume = {2},
  number = {20},
  journal = {The Journal of Open Source Software},
}

@Article{tidyverse2019,
  title = {Welcome to the {tidyverse}},
  author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  journal = {Journal of Open Source Software},
  volume = {4},
  number = {43},
  pages = {1686},
  doi = {10.21105/joss.01686},
}