diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml index 919f4c852..3930f1766 100644 --- a/.github/workflows/CI.yml +++ b/.github/workflows/CI.yml @@ -38,7 +38,7 @@ jobs: run: | cd snakemake && pytest --cov=helper_functions --cov-report=xml - name: Run workflow - run: docker exec -u xenon -t $NAME \ - bash -c "cd sv-callers && ./run.sh $ARGS" + run: | + docker exec -u xenon -t $NAME bash -c "cd sv-callers && ./run.sh $ARGS" - name: Report coverage run: python-codacy-coverage -r coverage.xml